PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G13820.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRF

Protein Properties

Length: 411aa MW: 43958.1 Da PI: 9.2388

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G13820.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.2	1.4e-23	108	152	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e OGLUM12G13820.1 108 DSEPGRCRRTDGKKWRCSRDAVVDQKYCERHINRGRHRSRKHVEG 152 689***************************************986 PP
2	QLQ	61.3	2.7e-21	37	73	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK+++an+PvP++Ll++i++ OGLUM12G13820.1 37 GPFTPTQWMELEHQALIYKHIVANAPVPARLLLPIRR 73 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.8E-12	37	73	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.957	38	73	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.7E-15	38	72	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.527	108	152	IPR014977	WRC domain
Pfam	PF08879	8.8E-20	110	151	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MAMATPTTNG SFLLGSGLDC GSSDVARMQG VLARVRGPFT PTQWMELEHQ ALIYKHIVAN 60 APVPARLLLP IRRSLHPPVF PHFSSGGILG SSSLGWGSFQ LGYSGSADSE PGRCRRTDGK 120 KWRCSRDAVV DQKYCERHIN RGRHRSRKHV EGQSSHAAKA TVPAIAQPPI GASNGKLSGS 180 HGVSNELTKT LATNRMMLDK ANLIERSQDY TNQQHNILQN NTKGDNWSEE MSSQADYAVI 240 PAGSLMNTPQ SANLNPIPQQ QRCKQSLFGK GIQHDDIQLS ISIPVDNSDL PTNYNKAQMD 300 HVVGGSSNGG NNTRASWIPG SWEASIGGPL GEFFTNTSSA SDDKGKSRHP PSLNLLADGH 360 TTSPQLQSPT GVLQMTSFSS VPSSTVSSPA GSLCNGLLTS GLVNAQTVQT L

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MAMATPTTNG SFLLGSGLDC GSSDVARMQG VLARVRGPFT PTQWMELEHQ ALIYKHIVAN  60
APVPARLLLP IRRSLHPPVF PHFSSGGILG SSSLGWGSFQ LGYSGSADSE PGRCRRTDGK  120
KWRCSRDAVV DQKYCERHIN RGRHRSRKHV EGQSSHAAKA TVPAIAQPPI GASNGKLSGS  180
HGVSNELTKT LATNRMMLDK ANLIERSQDY TNQQHNILQN NTKGDNWSEE MSSQADYAVI  240
PAGSLMNTPQ SANLNPIPQQ QRCKQSLFGK GIQHDDIQLS ISIPVDNSDL PTNYNKAQMD  300
HVVGGSSNGG NNTRASWIPG SWEASIGGPL GEFFTNTSSA SDDKGKSRHP PSLNLLADGH  360
TTSPQLQSPT GVLQMTSFSS VPSSTVSSPA GSLCNGLLTS GLVNAQTVQT L

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK241557	0.0	AK241557.1 Oryza sativa Japonica Group cDNA, clone: J065178H17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618985.1	0.0	PREDICTED: growth-regulating factor 7 isoform X2
Swissprot	Q6AWY2	0.0	GRF7_ORYSJ; Growth-regulating factor 7
TrEMBL	A0A0E0BSS8	0.0	A0A0E0BSS8_9ORYZ; Uncharacterized protein
STRING	BGIOSGA037400-PA	0.0	(Oryza sativa Indica Group)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	2e-43	growth-regulating factor 2